Computer Specifications

  • NVIDIA GeForce RTX 2080 Ti
  • 24 core processer
  • 192GB RAM
  • Arivis Image Analysis Software
  • Matlab
  • FIJI/ImageJ

The MicRoN core is pleased to offer our users image analysis capabilities on a workstation built to handle large datasets. Included in our software portfolio are standard programs such as FIJI, MATLAB, R, CellProfiler, Python, icy, etc. Additionally, we have a full license for arivis Vision4D, a powerful commercial analysis program capable of multi-dimensional data analysis, visualization, and animation with image sets in the terabyte file size.

To familiarize users with Vision4D we offer a 2-hour tutorial for $50 that will cover the following topics:

  • Data import and image visualization/navigation
  • Finding and viewing image metadata
  • Stitching multi-xy datasets
  • 4D viewing and high-resolution image rendering/video animation
  • An overview of the analysis capabilities and building of a template analysis pipeline for your dataset

As part of this 2-hour tutorial users must provide a data set to work with for building template analysis pipelines. The template pipeline is not a comprehensive solution for your analysis but should provide a sufficient starting workflow to build on for image analysis.

MicRoN staff is available to help you troubleshoot your analysis workflow, but currently we do not have the capability to create custom analysis. The core has access to remote support for more in-depth help from the Vision4D software team.

*The analysis workstation is not meant for long term storage of data. Please be sure you have a backup copy of your data stored somewhere else. MicRoN is not responsible for loss of data due to hard drive failure. The workstation is equipped with direct server connections, including OMERO, for easy transfer of data.

We currently have remote access capabilities for the workstation across all software programs. If this is something you would like to use, please let us know so we can get you set up.